Nutrients Cycle in Soil-Plant Systems

A.Y. 2025/2026
10
Max ECTS
88
Overall hours
SSD
AGR/13 AGR/16
Language
Italian
Learning objectives
The course aims to provide an in-depth knowledge of the interactions between the plant and the different components of the soil, deepening the knowledge of chemical and biological mechanisms that influence the availability of nutrients in the soil and the responses of plants to different nutrient inputs and environmental conditions. Moreover the course will investigated speciation of ions and the effect on plant and environment nutrient availability considering, also,
knowledge on the impact of organic and inorganic pollutants on the soil-plant system with particular attention to the quality and safety of plant productions.
Expected learning outcomes
At the end of the course the student should have acquired:
- knowledge of the physical, chemical and biological processes that control the nutrient and pollutant availability in soil;
- biochemical and physiological knowledge of soil-plant relationships in the response to nutrients and to the presence of inorganic and organic pollutants;
- critical ability regarding environmental defense issues in an agro-environmental context.
Single course

This course cannot be attended as a single course. Please check our list of single courses to find the ones available for enrolment.

Course syllabus and organization

Single session

Responsible
Lesson period
Second semester
Course syllabus
To provide a multidisciplinary teaching approach to the topics, the program will involve alternating lectures delivered by the professors participating in the course.
THE RHIZOSPHERE: INTERACTIONS BETWEEN PLANT-SOIL-MICROORGANISMS (CFU=1)
- Root development: characteristics, genetic and hormonal control. Root growth responses to environmental factors. The rhizosphere: characteristics and study methods. Biochemical activities of the root influencing the rhizosphere. Rhizodeposition.
- Microbial niches in the soil-plant system. Rhizosphere effect on microbial communities. Common microbial taxa in the rhizosphere and in the plant.
- Ecological interactions among microorganisms and with plants. Environmental conditions that influence microbial populations. Methods to study microorganisms in the soil-plant system.
PLANT MINERAL NUTRITION: GENERAL ASPECTS, SOIL FERTILITY, BIOGEOCHEMICAL CYCLES OF NUTRIENTS, PLANT ACQUISITION OF NUTRIENTS (CFU=3.5)
- Plant mineral nutrition: essential elements and beneficial elements. Classification and physiological functions. Laboratory analyses to determine mineral nutrient contents in plant tissues.
- The availability of mineral nutrients in soil. Plant nutritional demands and interactions among mineral nutrients. Deficiency and toxicity of mineral nutrients. Nutrient use efficiency in plants.
- Metabolic diversity of microorganisms in oxic and anoxic environments. Microbial activities contributing to soil fertility: microbial carbon fixation.
- Organic matter mineralization: microbial metabolisms in aerobic and anaerobic conditions. Humus formation.
- Microbial nitrogen metabolism in oxic and anoxic environments. Diazotrophy. Denitrification. Ammonification. Nitrification. Interventions in the nitrification process by the formulation of ammoniacal fertilizers.
- Nitrogen acquisition in plants. Root nitrate uptake: transport and regulation. Nitrogen reduction and assimilation: enzymes and metabolic regulation. Ammonium management in plants. Contribution of organic nitrogen to plant nutrition.
- Microbial sulfur metabolism. Assimilatory and dissimilatory sulfate reduction. Sulfur oxidation. Solubilization of inorganic phosphate and potassium. Mineralization of organic phosphate.
- Role of microorganisms in the bioavailability of plants micronutrients. Microbial iron metabolism. Iron oxidation. Dissimilatory iron reduction.
- Acquisition and metabolism of sulfur in plants. The role of sulfur in detoxifying toxic substances in plants.
- Phosphorus acquisition in plants. Phosphate absorption and transport in plants. Plant responses to phosphorus deficiency: root architecture and biochemical responses.
- Acquisition and roles of cationic macronutrients: magnesium, calcium, potassium. Functions in plants and responses to starvation.
- Micronutrients: roles, plant acquisition, and responses to deficiency. Focus on iron: species with Strategy I and II and nutritional interactions.
SOILS WITH REDUCED FERTILITY: ENVIRONMENTAL AND MICROBIOLOGICAL ASPECTS, PHYSIOLOGICAL AND BIOCHEMICAL RESPONSES OF PLANTS (CFU=1.25)
- Effect of water stress, salinity, and soil acidity on rhizospheric microbial communities.
- Water deficit stress: causes and effects on soil characteristics, root development, and plant physiology.
- Halophytes and glycophytes plant species. Salinity stress: the osmotic and ionic phases. Physiological and metabolic effects on plants. Plant strategies for stress response and adaptation.
- Waterlogging and flooding stresses. Plant metabolic responses and their regulation. Morphological and developmental changes. Roles of ethylene.
- Acid soil-induced stress. Aluminum toxicity: effects on plant growth and nutritional status. Adaptation mechanisms: detoxification and accumulation.
PLANT GROWTH PROMOTION: PLANT-MICROORGANISM RELATIONSHIPS, INOCULANTS, BIO-FERTILIZERS, AND BIOSTIMULANTS (CFU=1.75)
- Plant growth-promoting microorganisms: direct (production of plant hormone-like molecules increased nutrient availability) and indirect (pathogen competition, induction of systemic resistance) mechanisms. Communication among microorganisms and with the plant: quorum sensing, molecular signals and plant-microbe recognition.
- Secondary metabolism in root interactions: defining secondary metabolites and examples of their roles in defense and communication in the soil.
- Plant-microbe symbiosis: rhizobia and nitrogen fixation, and mycorrhizae.
- Plant physiological aspects related to establishing associations and symbiosis with soil microorganisms.
- Climate change: effects on plant mineral nutrition and rhizospheric interactions.
- Biostimulants: definition, categories, use in agriculture in relation to plant mineral nutrition and stress responses.
- Microbial bioinoculation practices: bioinoculants, suppressive soils and soil transplanting.
IMPACT OF HUMAN ACTIVITIES: INORGANIC AND ORGANIC POLLUTANTS AND THEIR IMPACT ON PLANT GROWTH, CONTAINMENT TECHNIQUES, ECOSYSTEM SERVICES OF MICROORGANISMS FOR AGRICULTURAL SUSTAINABILITY (CFU=1.5)
- Use of manure and sewage sludge in agriculture: spread of pathogens, role of microorganisms in pollution leading to nitrogen losses in water and air.
- Microbial reactions influencing heavy metal and metalloid bioavailability. Microbial biodegradation of organic contaminants. Microbe-assisted phytoremediation.
₋ Heavy metals. Factors involved in heavy metal distribution in plants. Toxicity, detoxification, and tolerance mechanisms.
- Heavy metals and phytoremediation: basic concepts and application. Heavy metals and food safety.
- Organic contaminants: implications for agricultural productivity and safety.

LABORATORY ACTIVITIES (CFU=1): integrated laboratory activities in plant physiology and microbiology, focusing on aspects of mineral nutrition and plant responses to abiotic stress factors.
Prerequisites for admission
Basic knowledge in the areas of plant physiology and biochemistry and of microbiology is recommended.
Teaching methods
- Lectures: attendance is not mandatory but recommended.
- Laboratory sessions: attendance is not mandatory but recommended.
For non-attending students, the syllabus and teaching materials are the same.
Teaching Resources
The material presented in class will be made available on the Ariel platform as .pdf files.
The teachers will provide a collection of scientific articles on some of the topics.
Recommended books:
- Marschner's Mineral Nutrition of Plants. 2022- IV edition. Editors: Rengel, Cakmak, White. Academic Press. Paperback ISBN: 9780128197738, eBook ISBN: 9780323853521.
- M.T. Madigan, K.S. Bender, D.H. Buckley, W.M. Sattley, D.A. Stahl. Brock - Biology of microrganisms. 2022, 16th edition. Ed. Pearson.
Assessment methods and Criteria
Student learning is evaluated via an oral interview. The exam encompasses questions covering all course topics and lasts approximately 30 minutes. The exam aims to evaluate: the attainment of expected learning outcomes; the student's ability to articulate ideas; proficiency in specific terminology; and the student's capacity to apply knowledge in hypothetical scenarios. Grades are awarded on a scale of thirty (30/30).

Students with SLD or disability certifications are kindly requested to contact the teacher at least 15 days before the date of the exam session to agree on individual exam requirements. In the email please make sure to add in cc the competent offices: [email protected] (for students with SLD) o [email protected] (for students with disability).
AGR/13 - AGRICULTURAL CHEMISTRY - University credits: 6
AGR/16 - AGRICULTURAL MICROBIOLOGY - University credits: 4
Laboratories: 16 hours
Lessons: 72 hours
Professor(s)
Reception:
By appointment. Please request by email.
At the office. Bldg. 21090, Faculty of Agricultural and Food Sciences, Milano. Alternatively, online on the Teams platform.
Reception:
Upon appointment
Via Mangiagalli 25, 20133 Milano, 3° floor